STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88218.1Glycoside hydrolase; Function of strongly homologous gene; enzyme. (624 aa)    
Predicted Functional Partners:
CCH90893.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 0.991
otsA
Trehalose-phosphate synthase; Function of strongly homologous gene; enzyme.
 
  
 0.933
treZ
Malto-oligosyltrehalose trehalohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.824
CCH88219.1
Homologs of previously reported genes of unknown function.
       0.773
CCH88220.1
Homologs of previously reported genes of unknown function.
       0.737
CCH88085.1
Putative glycosidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.736
treY
Maltooligosyl trehalose synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.699
treS-2
Trehalose synthase; Function of strongly homologous gene; enzyme.
 
  
 0.618
CCH89898.1
Putative trehalose biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
  
 0.588
CCH88221.1
Homologs of previously reported genes of unknown function.
       0.535
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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