STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88219.1Homologs of previously reported genes of unknown function. (166 aa)    
Predicted Functional Partners:
CCH88220.1
Homologs of previously reported genes of unknown function.
 
     0.869
CCH88217.1
Putative voltage-gated potassium channel; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.835
CCH88244.1
Putative Integral membrane permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.805
CCH88218.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme.
       0.773
CCH89024.1
Integral membrane protein of unknown function (modular protein); No homology to any previously reported sequences.
 
     0.765
CCH89350.1
Homologs of previously reported genes of unknown function.
 
     0.761
CCH88212.1
Homologs of previously reported genes of unknown function.
 
     0.749
CCH88229.1
Homologs of previously reported genes of unknown function.
 
     0.739
CCH87884.1
Putative multidrug resistance transporter, MFS family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.672
CCH88325.1
Chloride channel core; Function of strongly homologous gene; structure.
 
     0.660
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.