STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88229.1Homologs of previously reported genes of unknown function. (151 aa)    
Predicted Functional Partners:
CCH88228.1
Homologs of previously reported genes of unknown function.
 
     0.837
CCH88244.1
Putative Integral membrane permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.763
CCH88219.1
Homologs of previously reported genes of unknown function.
 
     0.739
CCH86971.1
Homologs of previously reported genes of unknown function.
 
     0.733
CCH88232.1
ATP-dependent transcriptional regulator, MalT-like, LuxR family.
  
     0.654
CCH88233.1
ATP-dependent transcriptional regulator, MalT-like, LuxR family.
  
     0.612
CCH86975.1
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.610
CCH88217.1
Putative voltage-gated potassium channel; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.607
CCH88209.1
Homologs of previously reported genes of unknown function.
  
     0.592
CCH87884.1
Putative multidrug resistance transporter, MFS family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.569
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.