STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88257.1Homologs of previously reported genes of unknown function. (358 aa)    
Predicted Functional Partners:
CCH88254.1
4-oxalomesaconate hydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.987
ligK
4-carboxy-4-hydroxy-2-oxoadipate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.963
ligA
Protocatechuate 4,5-dioxygenase, alpha chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.936
ligB-2
Protocatechuate 4,5-dioxygenase, beta chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.932
CCH88255.1
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; Function of strongly homologous gene; enzyme.
 
    0.905
gcvT-2
Aminomethyltransferase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
  
  0.901
gcvT
Aminomethyltransferase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
  
  0.895
pheB
Metapyrocatechase; Function of strongly homologous gene; enzyme.
 
  
 0.887
acnA
Aconitate hydratase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.869
CCH88406.1
Phenol 2-monooxygenase; Function of strongly homologous gene; enzyme.
  
  
 0.843
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.