STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligAProtocatechuate 4,5-dioxygenase, alpha chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (121 aa)    
Predicted Functional Partners:
ligB-2
Protocatechuate 4,5-dioxygenase, beta chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  0.999
CCH88796.1
Putative Extradiol ring-cleavage dioxygenase class III protein subunit B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  0.964
gcvT-2
Aminomethyltransferase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
  
  0.958
gcvT
Aminomethyltransferase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
  
  0.957
pobA
P-hydroxybenzoate hydroxylase; Function of strongly homologous gene; enzyme.
 
 
 0.940
CCH88257.1
Homologs of previously reported genes of unknown function.
 
  
 0.936
CCH88287.1
Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
  
  0.912
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Function of strongly homologous gene; enzyme.
    
 0.906
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Function of strongly homologous gene; enzyme.
    
 0.906
CCH88275.1
Putative hydrolase or acyltransferase of alpha/beta superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.865
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.