STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88288.1Peptidase dimerization domain protein; Function of strongly homologous gene; enzyme. (404 aa)    
Predicted Functional Partners:
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
   
 0.983
CCH88289.1
Protein of unknown function; No homology to any previously reported sequences.
     0.982
panE
2-dehydropantoate 2-reductase; Function of strongly homologous gene; enzyme.
 
    
 0.900
argG
Argininosuccinate synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
 0.596
CCH88287.1
Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
    0.541
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 0.496
CCH89593.1
Extracellular peptide-binding protein; Function of strongly homologous gene; transporter.
     0.489
CCH88286.1
Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme.
  
    0.431
oppF-3
Oligopeptide transport protein (ABC superfamily, ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily.
      0.415
apeH
Dipeptidyl aminopeptidase/acylaminoacyl peptidase; Function of strongly homologous gene; enzyme.
 
     0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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