STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88291.1Transcriptional regulator, XRE family; Function of strongly homologous gene; factor. (495 aa)    
Predicted Functional Partners:
aceA
Isocitrate lyase; Function of strongly homologous gene; enzyme.
 
   
 0.878
aceB
Malate synthase; Function of strongly homologous gene; enzyme.
 
   
 0.687
icmF
Methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
     
 0.560
mutB
Methylmalonyl-CoA mutase large subunit (MCM-alpha); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.466
gltA
Citrate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the citrate synthase family.
  
  
 0.457
aceB-2
Malate synthase; Function of strongly homologous gene; enzyme; Belongs to the malate synthase family.
 
   
 0.436
CCH90113.1
Homologs of previously reported genes of unknown function.
  
     0.434
CCH90896.1
Homologs of previously reported genes of unknown function.
  
     0.429
CCH87043.1
Copper resistance D protein (fragment); Function of strongly homologous gene; transporter.
  
     0.424
CCH86056.1
Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator.
      
 0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.