STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88308.1Two component signal transduction serine/threonine kinase; Function of strongly homologous gene; regulator. (314 aa)    
Predicted Functional Partners:
CCH90800.1
Putative Anti-sigma-B factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the anti-sigma-factor antagonist family.
 
   0.686
CCH87508.1
Homologs of previously reported genes of unknown function.
  
     0.670
CCH88309.1
Homologs of previously reported genes of unknown function.
 
     0.568
CCH87688.1
Homologs of previously reported genes of unknown function.
  
     0.553
rsbS
RsbT antagonist protein rsbS; Function of strongly homologous gene; factor.
 
   0.544
CCH88310.1
Putative PAS/PAC sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
 
 0.537
CCH86724.1
Homologs of previously reported genes of unknown function.
 
   0.532
CCH85488.1
Homologs of previously reported genes of unknown function.
 
 
 0.527
rsbR
RsbT co-antagonist protein rsbRA; Function of strongly homologous gene; factor.
 
   0.521
CCH87558.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
     0.518
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.