STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcaC3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit; Function of strongly homologous gene; enzyme. (106 aa)    
Predicted Functional Partners:
CCH88323.1
Ferredoxin reductase; Function of strongly homologous gene; enzyme.
 
 
 0.946
sufE
Ferredoxin containing [2Fe-2S] Rieske domain; Function of strongly homologous gene; carrier.
  
  
 
0.914
fprA
NADPH-ferredoxin reductase fprA; Function of strongly homologous gene; enzyme.
     
 0.904
CCH88416.1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Function of strongly homologous gene; enzyme.
 
 
 0.707
cysG
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
  
  
 0.674
nasD
Rieske (2Fe-2S) iron-sulphur domain protein; Function of strongly homologous gene; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 0.637
hemD
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
  
  
 0.633
CCH88321.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
  
    0.534
CCH88320.1
Putative [2Fe-2S] dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.533
soxA
Sarcosine oxidase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.460
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.