Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH88330.1Putative Xylose isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (293 aa)    
Predicted Functional Partners:
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
  
 
 0.798
CCH88331.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
       0.773
CCH88332.1
Monosaccharide-binding protein; Function of strongly homologous gene; transporter.
 
    0.639
CCH88329.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
       0.631
CCH88166.1
Hydroxypyruvate isomerase; Function of strongly homologous gene; enzyme; Belongs to the hyi family.
 
  
 0.567
CCH90846.1
Homologs of previously reported genes of unknown function.
 
    0.565
CCH88335.1
Alcohol dehydrogenase GroES domain protein; Function of strongly homologous gene; enzyme.
 
  
  0.513
CCH88327.1
Homologs of previously reported genes of unknown function.
  
    0.487
CCH88328.1
Alcohol dehydrogenase GroES domain protein; Function of strongly homologous gene; enzyme.
  
    0.480
CCH88337.1
Transketolase N-terminal section (TK); Function of strongly homologous gene; enzyme.
 
     0.477
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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