STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CCH88348.12-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Function of strongly homologous gene; enzyme. (334 aa)    
Predicted Functional Partners:
CCH88349.1
Putative alcohol dehydrogenase adh (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
  0.768
ligK
4-carboxy-4-hydroxy-2-oxoadipate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.682
CCH88257.1
Homologs of previously reported genes of unknown function.
    
 0.673
CCH88364.1
Homologs of previously reported genes of unknown function.
  
     0.610
CCH88359.1
Homologs of previously reported genes of unknown function.
  
     0.548
CCH88346.1
Putative Extracellular solute-binding protein family 5; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.535
CCH89564.1
Homologs of previously reported genes of unknown function.
  
     0.494
kynA
Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 0.482
CCH88351.1
Aldehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
 
  
  0.472
CCH88342.1
ABC transporter protein, ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
       0.458
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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