STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88348.12-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Function of strongly homologous gene; enzyme. (334 aa)    
Predicted Functional Partners:
CCH88349.1
Putative alcohol dehydrogenase adh (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.772
CCH88364.1
Homologs of previously reported genes of unknown function.
  
     0.610
CCH88359.1
Homologs of previously reported genes of unknown function.
  
     0.548
kynA
Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 0.540
CCH88346.1
Putative Extracellular solute-binding protein family 5; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.535
CCH89564.1
Homologs of previously reported genes of unknown function.
  
     0.494
CCH88342.1
ABC transporter protein, ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
       0.458
CCH88343.1
ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
       0.458
CCH88344.1
ABC-type oligopeptide transport permease; Function of strongly homologous gene; transporter.
       0.458
CCH88345.1
Peptide ABC transporter permease subunit; Function of strongly homologous gene; transporter.
       0.458
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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