STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vaoAVanillyl-alcohol oxidase; Function of strongly homologous gene; enzyme. (529 aa)    
Predicted Functional Partners:
CCH88283.1
X-Pro dipeptidyl-peptidase, C-terminal domain; Function of strongly homologous gene; enzyme.
 
     0.659
CCH87607.1
Homologs of previously reported genes of unknown function.
 
    0.632
glcE
Glycolate oxidase FAD binding subunit; Function of strongly homologous gene; enzyme.
  
     0.601
faeB
Feruloyl esterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.578
CCH88187.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme.
  
     0.473
thcR
Transcriptional regulator, AraC family; Function of strongly homologous gene; putative regulator.
       0.447
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.