STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vaoAVanillyl-alcohol oxidase; Function of strongly homologous gene; enzyme. (529 aa)    
Predicted Functional Partners:
CCH88283.1
X-Pro dipeptidyl-peptidase, C-terminal domain; Function of strongly homologous gene; enzyme.
 
     0.659
CCH87607.1
Homologs of previously reported genes of unknown function.
 
 
  0.642
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
 0.607
glcE
Glycolate oxidase FAD binding subunit; Function of strongly homologous gene; enzyme.
  
     0.601
faeB
Feruloyl esterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.579
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
  
 
 0.557
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.532
etfA
Electron transfer flavoprotein alpha subunit; Function of strongly homologous gene; carrier.
  
 0.484
CCH88187.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme.
  
     0.473
etfB
Electron transfer flavoprotein subunit beta; Function of strongly homologous gene; carrier.
  
 0.464
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.