STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88392.1Inosine-uridine preferring nucleoside hydrolase; Function of strongly homologous gene; enzyme. (311 aa)    
Predicted Functional Partners:
CCH88393.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; factor.
       0.773
CCH88394.1
ABC-type dipeptide transport system, extracellular solute-binding protein; Function of strongly homologous gene; transporter.
 
     0.666
CCH88402.1
Alpha-L-rhamnosidase; Function of strongly homologous gene; enzyme.
 
    0.589
CCH88399.1
Xylosidase/arabinosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
     0.587
CCH88390.1
Carboxylesterase; Function of strongly homologous gene; enzyme.
 
     0.548
CCH88391.1
Oxidoreductase; Function of strongly homologous gene; enzyme.
  
    0.539
CCH88396.1
Dipeptide ABC transporter permease and ATP-binding protein; Function of strongly homologous gene; transporter.
 
     0.503
CCH87622.1
Alpha-L-rhamnosidase; Function of strongly homologous gene; enzyme.
  
    0.452
CCH88404.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
 
     0.441
CCH87624.1
alpha-L-rhamnosidase A; Function of strongly homologous gene; enzyme.
  
    0.438
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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