STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88393.1Transcriptional regulator, TetR family; Function of strongly homologous gene; factor. (202 aa)    
Predicted Functional Partners:
CCH88392.1
Inosine-uridine preferring nucleoside hydrolase; Function of strongly homologous gene; enzyme.
       0.773
CCH88394.1
ABC-type dipeptide transport system, extracellular solute-binding protein; Function of strongly homologous gene; transporter.
 
     0.636
CCH88396.1
Dipeptide ABC transporter permease and ATP-binding protein; Function of strongly homologous gene; transporter.
 
     0.557
CCH88391.1
Oxidoreductase; Function of strongly homologous gene; enzyme.
       0.528
CCH89773.1
Putative LPXTG-motif cell wall anchor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
     0.497
bglK
Beta-glucosidase (Glycosyl hydrolase,family3); Function of strongly homologous gene; enzyme.
 
     0.482
CCH88390.1
Carboxylesterase; Function of strongly homologous gene; enzyme.
       0.472
CCH89489.1
Regulatory protein TetR.
  
     0.426
CCH88401.1
Xylan 1,4-beta-xylosidase; Function of strongly homologous gene; enzyme.
 
     0.424
CCH88395.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
       0.411
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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