STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88399.1Xylosidase/arabinosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family. (511 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.904
CCH88400.1
Glycoside hydrolase family 2 sugar binding; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
     0.880
uidA-2
Beta-glucuronidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.843
uidA
Beta-glucuronidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.842
uxaC-2
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.837
uxaC
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.835
bglK
Beta-glucosidase (Glycosyl hydrolase,family3); Function of strongly homologous gene; enzyme.
 
   
 0.825
CCH88396.1
Dipeptide ABC transporter permease and ATP-binding protein; Function of strongly homologous gene; transporter.
       0.780
CCH88395.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
  
    0.775
CCH88397.1
Oligopeptide transporter subunit; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
       0.773
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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