STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88407.1Metal-dependent hydrolases of the beta-lactamase superfamily; Function of strongly homologous gene; enzyme. (394 aa)    
Predicted Functional Partners:
CCH87939.1
DNA/RNA non-specific endonuclease; Function of strongly homologous gene; enzyme.
   
   0.723
CCH90306.1
Homologs of previously reported genes of unknown function.
   
   0.723
CCH88408.1
Transcriptional regulator, TetR family (fragment); Function of strongly homologous gene; factor.
       0.541
rph
RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.540
CCH90947.1
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; Function of strongly homologous gene; enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.513
CCH88422.1
X-Pro dipeptidyl-peptidase; Function of strongly homologous gene; enzyme.
  
     0.490
rnj
Hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
      
 0.485
pnp
Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.484
CCH88441.1
Sulfatase-modifying factor; Function of strongly homologous gene; cell process.
 
   
 0.469
CCH88242.1
Sulfatase-modifying factor 1; Function of strongly homologous gene; factor.
 
   
 0.468
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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