STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88411.1Transcriptional regulator, TetR family; Function of strongly homologous gene; factor. (204 aa)    
Predicted Functional Partners:
CCH88412.1
Protein of unknown function; No homology to any previously reported sequences.
       0.634
CCH88422.1
X-Pro dipeptidyl-peptidase; Function of strongly homologous gene; enzyme.
  
     0.522
CCH88409.1
Protein of unknown function; No homology to any previously reported sequences.
       0.515
CCH88410.1
Protein of unknown function; No homology to any previously reported sequences.
       0.515
CCH85847.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
  
     0.490
gloB
Hydroxyacylglutathione hydrolase; Function of strongly homologous gene; enzyme.
  
     0.444
CCH88604.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
  
     0.412
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.