STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88464.1Putative Predicted xylanase/chitin deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (310 aa)    
Predicted Functional Partners:
CCH88463.1
Extradiol aromatic ring-opening dioxygenase; Function of strongly homologous gene; enzyme.
       0.714
CCH86818.1
Glycosyl transferase, family 2; Function of strongly homologous gene; enzyme.
 
  
 0.521
ureG-2
Urease accessory protein UreG (modular protein); Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
       0.498
CCH90751.1
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.454
CCH85888.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
  
  
 0.442
CCH86660.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
  
  
 0.442
CCH88899.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
  
  
 0.442
CCH88462.1
Protein of unknown function; No homology to any previously reported sequences.
       0.432
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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