STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uidA-3Beta-glucuronidase; Function of strongly homologous gene; enzyme. (117 aa)    
Predicted Functional Partners:
CCH88400.1
Glycoside hydrolase family 2 sugar binding; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
  
   
 0.827
CCH87627.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
  
   
 0.817
CCH88479.1
Carbohydrate kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
  
  
 0.784
uidB
Glucuronide transporter:cation symporter; Function of strongly homologous gene; transporter.
 
 
 0.671
uxaC
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.584
uxaC-2
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.582
aglA
Glycosidase; Function of strongly homologous gene; enzyme.
   
  
 0.543
aglA-2
Alpha-glucosidase; Function of strongly homologous gene; enzyme.
   
  
 0.543
aglA-3
Alpha-glucosidase; Function of strongly homologous gene; enzyme.
   
  
 0.543
CCH87760.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.452
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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