STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88491.1Polysaccharide deacetylase; Function of strongly homologous gene; enzyme. (298 aa)    
Predicted Functional Partners:
CCH88492.1
Putative cytosine/purine/uracil/thiamine/allantoin permease family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the purine-cytosine permease (2.A.39) family.
 
     0.838
allC
Allantoicase; Function of strongly homologous gene; enzyme; Belongs to the allantoicase family.
  
 
 0.786
CCH85587.1
Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Function of strongly homologous gene; enzyme.
  
 
  0.766
allB
Allantoinase; Function of strongly homologous gene; enzyme.
    
  0.747
CCH89588.1
Putative D-phenylhydantoinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
  0.731
CCH88490.1
Amidohydrolase (fragment); Function of strongly homologous gene; enzyme.
       0.603
CCH88493.1
Transcriptional regulator, CdaR family; Function of strongly homologous gene; regulator.
       0.539
CCH90659.1
Putative Polysaccharide deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.479
yedX
5-hydroxyisourate hydrolase; Function of strongly homologous gene; enzyme; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.451
CCH85891.1
Dolichyl-phosphate-mannose--protein O-mannosyl transferase; Function of strongly homologous gene; transporter.
  
 
 0.400
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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