STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88495.1Creatinase; Function of strongly homologous gene; enzyme. (409 aa)    
Predicted Functional Partners:
CCH88314.1
Dimethylglycine oxidase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
 0.807
soxG-2
Sarcosine oxidase subunit gamma; Function of strongly homologous gene; enzyme.
 
  
  0.793
soxA
Sarcosine oxidase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.788
soxB-2
Sarcosine oxidase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
  0.776
soxA-2
Sarcosine oxidase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.771
soxD-2
Sarcosine oxidase subunit delta; Function of strongly homologous gene; enzyme.
 
  
  0.730
CCH88494.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
 
     0.646
soxB
Sarcosine oxidase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
  0.645
soxD
Sarcosine oxidase delta subunit; Function of strongly homologous gene; enzyme.
  
  
  0.565
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
     
 0.458
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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