STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88529.1Homologs of previously reported genes of unknown function. (500 aa)    
Predicted Functional Partners:
CCH88530.1
Homologs of previously reported genes of unknown function.
 
   
 0.913
CCH88531.1
Homologs of previously reported genes of unknown function.
 
     0.906
CCH88524.1
Putative conjugative transfer gene complex protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
  
 0.880
CCH88528.1
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.825
dnaG-3
DNA primase; Function of strongly homologous gene; enzyme.
 
   
 0.812
dnaG-4
DNA primase; Function of strongly homologous gene; enzyme.
 
   
 0.812
dnaG
DNA primase; Function of strongly homologous gene; enzyme.
 
   
 0.810
CCH87130.1
Homologs of previously reported genes of unknown function.
 
   
 0.800
CCH89135.1
Homologs of previously reported genes of unknown function.
 
   
 0.800
CCH87133.1
Homologs of previously reported genes of unknown function.
 
  
 0.798
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.