STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88537.12,5-didehydrogluconate reductase; Function of strongly homologous gene; enzyme. (297 aa)    
Predicted Functional Partners:
CCH88531.1
Homologs of previously reported genes of unknown function.
    
  0.692
CCH88530.1
Homologs of previously reported genes of unknown function.
       0.668
CCH88532.1
Homologs of previously reported genes of unknown function.
       0.668
CCH88533.1
Homologs of previously reported genes of unknown function.
       0.668
CCH88534.1
Homologs of previously reported genes of unknown function.
       0.668
CCH88535.1
Protein of unknown function; No homology to any previously reported sequences.
       0.668
CCH88536.1
Protein of unknown function; No homology to any previously reported sequences.
       0.668
CCH88542.1
Homologs of previously reported genes of unknown function.
     0.668
CCH86438.1
L-threonine ammonia-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.652
CCH88538.1
NAD-dependent epimerase/dehydratase; Function of strongly homologous gene; enzyme.
  
   0.650
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.