STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88566.1Phage integrase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family. (409 aa)    
Predicted Functional Partners:
CCH88565.1
DNA binding excisionase; Function of strongly homologous gene; enzyme.
     
 0.650
CCH89087.1
Putative Tyrosine recombinase xerC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 'phage' integrase family.
  
     0.579
CCH86977.1
Integrase family protein; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
  
     0.573
ftsK
DNA translocase ftsK; Function of strongly homologous gene; cell process.
 
   
 0.536
CCH89282.1
Integrase; Function of strongly homologous gene; enzyme.
  
     0.521
CCH90066.1
Predicted amidophosphoribosyltransferase; Function of strongly homologous gene; carrier.
   
    0.485
parB
Chromosome-partitioning protein parB; Function of homologous gene experimentally demonstrated in an other organism; cell process; Belongs to the ParB family.
  
  
 0.485
CCH88567.1
Protein of unknown function; No homology to any previously reported sequences.
      
0.459
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
  0.454
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.451
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.