STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
xylB-2Xylulose kinase; Function of strongly homologous gene; enzyme. (466 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
 
 0.994
CCH85714.1
Class II aldolase/adducin family protein; Function of strongly homologous gene; enzyme.
 
 
 0.811
xylB-3
Xylulose kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
 
  
 
0.743
rpe
Ribulose-phosphate 3-epimerase; Function of strongly homologous gene; enzyme; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.713
CCH88575.1
Putative xylose repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.708
gndA
6-phosphogluconate dehydrogenase (Decarboxylating); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.696
CCH88571.1
Aldose 1-epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.695
gnd
6-phosphogluconate dehydrogenase, decarboxylating 2; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
 0.659
rpiB
Ribose-5-phosphate isomerase B; Function of strongly homologous gene; enzyme.
    
 0.656
ugpC
Glycerol-3-phosphate ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
     
 0.619
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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