STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family. (395 aa)    
Predicted Functional Partners:
xylB-2
Xylulose kinase; Function of strongly homologous gene; enzyme.
 
 
 0.997
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
     
 0.973
xylB-3
Xylulose kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
 
 
 0.949
CCH87902.1
Ribokinase; Function of strongly homologous gene; enzyme; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.923
CCH87704.1
Putative xylitol oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
  0.921
frk
Sugar kinase, ribokinase; Function of strongly homologous gene; enzyme.
 
  
 0.920
CCH87825.1
Alcohol dehydrogenase, zinc-binding domain protein; Function of strongly homologous gene; enzyme.
     
 0.906
CCH88335.1
Alcohol dehydrogenase GroES domain protein; Function of strongly homologous gene; enzyme.
     
 0.906
CCH90687.1
Putative L-threonine 3-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.906
glcK
Glucokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.821
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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