STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family. (395 aa)    
Predicted Functional Partners:
xylB-2
Xylulose kinase; Function of strongly homologous gene; enzyme.
 
 
 0.994
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
     
 0.961
xylB-3
Xylulose kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
 
 
 0.898
CCH90852.1
Carbohydrate kinase, FGGY; Function of strongly homologous gene; enzyme.
 
 
 0.854
CCH88575.1
Putative xylose repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.832
glcK
Glucokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.782
CCH87902.1
Ribokinase; Function of strongly homologous gene; enzyme; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.757
CCH88479.1
Carbohydrate kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
  
 
 0.756
CCH87704.1
Putative xylitol oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
  0.749
frk
Sugar kinase, ribokinase; Function of strongly homologous gene; enzyme.
 
  
 0.746
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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