STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88575.1Putative xylose repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (400 aa)    
Predicted Functional Partners:
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
    
 0.941
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
  
 0.832
glcK
Glucokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 
0.728
xylB-2
Xylulose kinase; Function of strongly homologous gene; enzyme.
 
  
 0.708
pgi
Glucose-6-phosphate isomerase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the GPI family.
    
 0.623
pgm
Phosphomannomutase/phosphoglucomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.608
CCH88443.1
PTS system, beta-glucoside-specific IIABC component; Function of strongly homologous gene; enzyme.
  
 0.602
ppgK
Polyphosphate glucokinase; Function of strongly homologous gene; enzyme.
     
  0.577
CCH88571.1
Aldose 1-epimerase; Function of strongly homologous gene; enzyme.
    
 0.523
tkt
Transketolase; Function of strongly homologous gene; enzyme; Belongs to the transketolase family.
  
 
 0.511
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.