STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88575.1Putative xylose repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (400 aa)    
Predicted Functional Partners:
xylB-2
Xylulose kinase; Function of strongly homologous gene; enzyme.
 
  
 0.779
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
   
 0.750
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
  
  
 0.527
CCH88443.1
PTS system, beta-glucoside-specific IIABC component; Function of strongly homologous gene; enzyme.
  
 
 0.491
CCH88571.1
Aldose 1-epimerase; Function of strongly homologous gene; enzyme.
     
 0.471
ugpC
Glycerol-3-phosphate ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
     
 0.454
glcK
Glucokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
    
0.400
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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