STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88593.1Homologs of previously reported genes of unknown function. (142 aa)    
Predicted Functional Partners:
pduD
Propanediol dehydratase medium subunit; Function of strongly homologous gene; enzyme.
 
  
 0.787
pduC
Propanediol dehydratase large subunit; Function of strongly homologous gene; enzyme.
 
  
 0.778
pduG
Diol/glycerol dehydratase reactivating factor large subunit; Function of strongly homologous gene; enzyme.
 
  
 0.769
pduE
Propanediol dehydratase small subunit; Function of strongly homologous gene; enzyme.
 
  
 0.765
pduD-2
Propanediol dehydratase medium subunit; Function of strongly homologous gene; enzyme.
 
   
 0.723
CCH88594.1
Serine/threonine protein kinase with PASTA sensor(S); Function of strongly homologous gene; enzyme.
       0.682
nudF
ADP-ribose pyrophosphatase; Function of strongly homologous gene; enzyme.
       0.444
pyrG
CTP synthase (UTP--ammonia ligase) (CTP synthetase); Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.444
CCH88597.1
Homologs of previously reported genes of unknown function.
       0.444
CCH88598.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
       0.444
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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