STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MODMU_3177Fragment of Flagellin assembly, membrane protein MviN (part 1); Function of strongly homologous gene; structure. (279 aa)    
Predicted Functional Partners:
CCH88603.1
Thiamin pyrophosphokinase, catalytic region; Function of strongly homologous gene; enzyme.
 
     0.960
CCH88602.1
Homologs of previously reported genes of unknown function.
 
     0.958
CCH88597.1
Homologs of previously reported genes of unknown function.
 
     0.827
CCH88037.1
Homologs of previously reported genes of unknown function.
 
     0.801
CCH88598.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.738
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.733
murF
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 
 0.720
CCH88133.1
Penicillin-binding protein transpeptidase.
  
  
 0.671
CCH88604.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
       0.516
murC
UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme; Cell wall formation; Belongs to the MurCDEF family.
  
  
 0.510
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.