STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88602.1Homologs of previously reported genes of unknown function. (317 aa)    
Predicted Functional Partners:
CCH88603.1
Thiamin pyrophosphokinase, catalytic region; Function of strongly homologous gene; enzyme.
 
  
 0.992
MODMU_3177
Fragment of Flagellin assembly, membrane protein MviN (part 1); Function of strongly homologous gene; structure.
 
     0.960
CCH90622.1
Cell wall-associated hydrolase, invasion-associated protein; Function of strongly homologous gene; enzyme.
   
 
 0.923
CCH88597.1
Homologs of previously reported genes of unknown function.
 
     0.804
CCH88037.1
Homologs of previously reported genes of unknown function.
 
     0.799
CCH88776.1
Homologs of previously reported genes of unknown function.
  
     0.658
CCH86544.1
Putative Cell wall-associated peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.602
CCH87029.1
Cell wall-associated hydrolase; Function of strongly homologous gene; enzyme.
   
 
 0.602
CCH88528.1
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.602
CCH88935.1
Putative Cell wall-associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
   
 
 0.602
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.