STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88604.1Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator. (309 aa)    
Predicted Functional Partners:
CCH86537.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.549
MODMU_3177
Fragment of Flagellin assembly, membrane protein MviN (part 1); Function of strongly homologous gene; structure.
       0.516
CCH88602.1
Homologs of previously reported genes of unknown function.
       0.516
CCH88603.1
Thiamin pyrophosphokinase, catalytic region; Function of strongly homologous gene; enzyme.
       0.516
CCH90769.1
Putative transcriptional regulator, TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.494
CCH88704.1
Purine catabolism regulator-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
   
 0.480
CCH86229.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.457
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.436
CCH89894.1
Homologs of previously reported genes of unknown function.
  
     0.414
CCH88411.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; factor.
  
     0.412
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.