STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88605.1Fatty acid desaturase; Function of strongly homologous gene; enzyme. (397 aa)    
Predicted Functional Partners:
CCH88606.1
Flavodoxin reductase; Function of strongly homologous gene; enzyme.
 
 0.999
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.907
CCH88608.1
Putative transcriptional regulator, PucR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.865
pobB-2
Phthalate 4,5-dioxygenase; Function of strongly homologous gene; enzyme.
 
 
 0.796
pobB
Phenoxybenzoate dioxygenase subunit beta; Function of strongly homologous gene; enzyme.
  
 
 0.769
paaE
Phenylacetic acid degradation NADH oxidoreductase; Function of strongly homologous gene; enzyme.
  
 
 0.769
CCH90864.1
Fatty acid desaturase; Function of strongly homologous gene; enzyme.
    
 0.700
CCH85702.1
Saccharopine dehydrogenase; Function of strongly homologous gene; enzyme.
  
     0.520
CCH87000.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.512
fabG-2
3-oxoacyl-[acyl-carrier-protein] reductase; Function of strongly homologous gene; enzyme.
  
 
 0.497
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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