STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssb-2Single-stranded DNA-binding protein ssb; Function of strongly homologous gene; cell process. (119 aa)    
Predicted Functional Partners:
ssb
Single-stranded DNA-binding protein; Function of strongly homologous gene; cell process.
     
  0.900
ssb-3
Single-stranded DNA-binding protein; Function of strongly homologous gene; cell process.
     
  0.900
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.809
gpmB
Phosphoglycerate mutase; Function of strongly homologous gene; enzyme.
   
 
 0.754
priA
Putative primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
   
 
 0.739
dnaE
DNA polymerase III subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.723
CCH88891.1
DNA polymerase III, alpha subunit; Function of strongly homologous gene; enzyme; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
   
 
 0.723
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 
 0.718
dnaX-2
DNA polymerase III, delta prime subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.718
rplU
Fragment of Ribonuclease, Rne/Rng family (part 2); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
    0.686
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.