STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88632.1Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme. (268 aa)    
Predicted Functional Partners:
pheS
Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
  
    0.780
pheT
Phenylalanyl-tRNA synthetase beta chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.778
CCH85582.1
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.775
CCH88452.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
 
   0.769
CCH90611.1
Putative short-chain dehydrogenase/reductase SDR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
   0.696
CCH86661.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
 
   0.651
CCH89073.1
Short-chain dehydrogenase/reductase (SDR) family protein; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.638
CCH88635.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.533
ELI
Tyrosine decarboxylase 1; Function of strongly homologous gene; enzyme.
 
 
    0.466
CCH89606.1
Putative oxidoreductase, NAD(P)-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
   0.460
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.