Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sixAPhosphohistidine phosphatase, SixA; Function of strongly homologous gene; enzyme. (164 aa)    
Predicted Functional Partners:
CCH88659.1
Homologs of previously reported genes of unknown function.
       0.636
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.612
CCH88658.1
Protein chain release factor B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
 
   
 0.547
CCH85590.1
Putative acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.485
CCH88657.1
Putative membrane protein (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.451
birA
biotin-(Acetyl-CoA-carboxylase) ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.445
CCH88656.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; putative enzyme.
       0.411
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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