STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88678.1Transcriptional regulator, XRE family; Function of strongly homologous gene; putative regulator. (265 aa)    
Predicted Functional Partners:
CCH88679.1
Putative isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.887
CCH86569.1
Homologs of previously reported genes of unknown function.
 
     0.781
CCH88677.1
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; Function of strongly homologous gene; enzyme.
       0.603
treS
Trehalose synthase (Maltose alpha-D-glucosyltransferase); Function of strongly homologous gene; enzyme.
       0.539
CCH88680.1
Bifunctional deaminase-reductase domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.478
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
  
 
  0.447
CCH87600.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; enzyme.
  
    0.442
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.