STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88785.1Homologs of previously reported genes of unknown function. (306 aa)    
Predicted Functional Partners:
sigK
RNA polymerase sigma factor, ECF family; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.946
CCH85675.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.774
CCH87799.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.774
CCH89254.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.774
CCH89571.1
RNA polymerase, sigma-24 subunit, ECF subfamily (fragment); Function of strongly homologous gene; cell process; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.774
CCH88784.1
Homologs of previously reported genes of unknown function.
       0.536
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
       0.518
CCH87844.1
Thioredoxin; Function of strongly homologous gene; enzyme.
     
 0.495
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.