STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88793.1Protein of unknown function; No homology to any previously reported sequences. (346 aa)    
Predicted Functional Partners:
CCH88794.1
Methyltransferase; Function of strongly homologous gene; enzyme.
 
     0.975
secA
Preprotein translocase subunit SecA; Function of strongly homologous gene; transporter.
  
     0.684
CCH87387.1
Homologs of previously reported genes of unknown function.
  
    0.665
CCH90405.1
Homologs of previously reported genes of unknown function.
  
     0.651
CCH88776.1
Homologs of previously reported genes of unknown function.
  
     0.619
whiB-4
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.593
rpsA
30S ribosomal protein S1; Function of homologous gene experimentally demonstrated in an other organism; structure.
       0.591
CCH88915.1
Transcriptional regulator; Function of strongly homologous gene; regulator.
  
     0.574
CCH88641.1
Homologs of previously reported genes of unknown function.
  
    0.567
CCH90079.1
Homologs of previously reported genes of unknown function.
  
     0.527
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.