Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH88793.1Protein of unknown function; No homology to any previously reported sequences. (346 aa)    
Predicted Functional Partners:
CCH88794.1
Methyltransferase; Function of strongly homologous gene; enzyme.
 
     0.975
secA
Preprotein translocase subunit SecA; Function of strongly homologous gene; transporter.
  
     0.684
CCH88314.1
Dimethylglycine oxidase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
     
 0.675
CCH87387.1
Homologs of previously reported genes of unknown function.
  
     0.665
CCH90405.1
Homologs of previously reported genes of unknown function.
  
     0.651
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
    
 0.645
CCH88776.1
Homologs of previously reported genes of unknown function.
  
     0.619
whiB-4
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.593
rpsA
30S ribosomal protein S1; Function of homologous gene experimentally demonstrated in an other organism; structure.
       0.585
CCH88915.1
Transcriptional regulator; Function of strongly homologous gene; regulator.
  
     0.574
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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