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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88810.1Putative Response regulator with antiterminator output domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (205 aa)    
Predicted Functional Partners:
CCH89965.1
Putative two-component system sensor kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.882
rpsA
30S ribosomal protein S1; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
    0.741
CCH90443.1
Sensor protein; Function of strongly homologous gene; enzyme.
 
     0.624
CCH88809.1
ABC-type branched-chain amino acid transport system, Extracellular ligand-binding receptor; Function of strongly homologous gene; transporter.
  
   0.601
phoR
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
     0.569
CCH87291.1
Homologs of previously reported genes of unknown function.
   
    0.553
atpD
ATP synthase, beta subunit, F1 sector; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
    0.552
atpC
ATP synthase, epsilon subunit, F1 sector; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
    0.526
CCH90481.1
Sensor protein; Function of strongly homologous gene; enzyme.
 
    0.523
phoR-2
Two-component Pi level signal transduction regulator, system with PhoB; Function of strongly homologous gene; enzyme.
 
     0.494
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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