STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88850.1CAAX amino terminal protease; Function of strongly homologous gene; enzyme. (261 aa)    
Predicted Functional Partners:
rluD
23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.800
CCH88849.1
Putative acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.773
CCH89894.1
Homologs of previously reported genes of unknown function.
 
     0.757
CCH86537.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.743
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.695
CCH89013.1
Homologs of previously reported genes of unknown function.
  
     0.649
CCH90067.1
Lipoprotein LpqB, beta-propeller domain-like protein; Function of strongly homologous gene; cell process.
  
     0.649
CCH86511.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.632
lspA-2
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.619
CCH90524.1
Homologs of previously reported genes of unknown function.
  
     0.596
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.