STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88882.1Glycosyl transferase family 2 (fragment); Function of strongly homologous gene; enzyme. (180 aa)    
Predicted Functional Partners:
CCH88885.1
Putative acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
   0.955
CCH88883.1
Methyltransferase type 12; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.947
CCH88884.1
N-acetylglucosaminyl phosphatidylinositol deacetylase; Function of strongly homologous gene; enzyme.
 
   
 0.947
CCH88886.1
Protein of unknown function; No homology to any previously reported sequences.
   
   0.783
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
    0.618
CCH88887.1
Homologs of previously reported genes of unknown function.
       0.565
CCH88888.1
Sucraseferredoxin family protein; Function of strongly homologous gene; carrier.
       0.565
CCH87670.1
Homologs of previously reported genes of unknown function.
  
     0.530
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
  
  
 0.463
CCH86668.1
Homologs of previously reported genes of unknown function.
  
    0.421
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.