STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88887.1Homologs of previously reported genes of unknown function. (443 aa)    
Predicted Functional Partners:
CCH88888.1
Sucraseferredoxin family protein; Function of strongly homologous gene; carrier.
 
     0.950
rplP
50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.896
CCH88886.1
Protein of unknown function; No homology to any previously reported sequences.
  
    0.566
CCH88882.1
Glycosyl transferase family 2 (fragment); Function of strongly homologous gene; enzyme.
       0.565
CCH88883.1
Methyltransferase type 12; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.565
CCH88884.1
N-acetylglucosaminyl phosphatidylinositol deacetylase; Function of strongly homologous gene; enzyme.
       0.565
CCH88885.1
Putative acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.565
CCH90482.1
Conserved protein of unknown function, putative UDP-Glycosyltransferase/glycogen phosphorylase; Homologs of previously reported genes of unknown function.
  
     0.472
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.460
CCH90617.1
Homologs of previously reported genes of unknown function.
  
     0.441
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.