STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88890.1Methyltransferase; Function of strongly homologous gene; enzyme. (245 aa)    
Predicted Functional Partners:
CCH88889.1
Function of strongly homologous gene; enzyme.
       0.836
CCH88314.1
Dimethylglycine oxidase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
   
 0.786
chlD
Cobaltochelatase subunit; Function of strongly homologous gene; transporter.
 
 0.746
CCH85548.1
Homologs of previously reported genes of unknown function.
   
   0.698
gcvP
Glycine cleavage system P-protein (glycine dehydrogenase); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.689
CCH88892.1
Homologs of previously reported genes of unknown function.
       0.641
CCH88891.1
DNA polymerase III, alpha subunit; Function of strongly homologous gene; enzyme; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
     
 0.579
CCH90008.1
Putative ubiquinone chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
 
 0.562
CCH89785.1
Peptidase M23; Function of strongly homologous gene; enzyme.
 
 
    0.546
soxA
Sarcosine oxidase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.524
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.