STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88898.1Homologs of previously reported genes of unknown function. (252 aa)    
Predicted Functional Partners:
CCH88899.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
 
   
 0.949
crtO
Beta-carotene ketolase; Function of strongly homologous gene; enzyme.
 
  
 0.944
CCH86619.1
Phytoene desaturase; Function of strongly homologous gene; enzyme.
 
  
 0.839
pgsA
Phosphatidylglycerophosphate synthase; Function of strongly homologous gene; enzyme.
  
     0.693
CCH88900.1
Homologs of previously reported genes of unknown function.
       0.642
CCH88896.1
Acetyltransferase; Function of strongly homologous gene; enzyme.
       0.635
crtI
Phytoene dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.635
crtB
Phytoene synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.621
CCH86944.1
Putative phytoene dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.619
CCH88784.1
Homologs of previously reported genes of unknown function.
  
     0.571
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.