STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88905.1ABC transporter; Function of strongly homologous gene; transporter. (265 aa)    
Predicted Functional Partners:
CCH88904.1
ABC transporter membrane protein; Function of strongly homologous gene; transporter.
 
 
 0.961
CCH88906.1
Sigma E regulatory protein, MucB/RseB; Function of strongly homologous gene; regulator.
 
     0.861
CCH86231.1
Putative ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.629
CCH87107.1
Nod factor export ATP-binding protein I (fragment).
 
     0.623
CCH86301.1
Transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
  
     0.576
CCH86302.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
  
     0.572
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Function of strongly homologous gene; transporter.
  
    0.558
CCH86314.1
ABC transporter; Function of strongly homologous gene; transporter.
  
  0.503
CCH86313.1
ABC-type transport system, ATPase; Function of strongly homologous gene; enzyme.
  
  0.495
CCH90833.1
Putative ABC-type transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.458
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.