STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88906.1Sigma E regulatory protein, MucB/RseB; Function of strongly homologous gene; regulator. (354 aa)    
Predicted Functional Partners:
CCH88904.1
ABC transporter membrane protein; Function of strongly homologous gene; transporter.
 
     0.882
CCH88905.1
ABC transporter; Function of strongly homologous gene; transporter.
 
     0.860
estB
Extracellular esterase estB; Function of strongly homologous gene; enzyme.
  
     0.741
CCH86231.1
Putative ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.626
CCH90773.1
Homologs of previously reported genes of unknown function.
  
     0.543
CCH88907.1
Homologs of previously reported genes of unknown function.
       0.517
CCH90772.1
Homologs of previously reported genes of unknown function.
  
     0.495
CCH86225.1
Homologs of previously reported genes of unknown function.
 
 
 0.444
CCH90639.1
Homologs of previously reported genes of unknown function.
  
     0.443
CCH88908.1
Homologs of previously reported genes of unknown function.
       0.441
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.