STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtIPhytoene dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (516 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
idsA
Geranylgeranyl pyrophosphate synthase; Function of strongly homologous gene; enzyme; Belongs to the FPP/GGPP synthase family.
  
  
 0.979
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.763
crtY
Lycopene cyclase domain; Function of strongly homologous gene; enzyme.
 
   
 0.671
metF
5,10-methylenetetrahydrofolate reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.669
hom
Homoserine dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.658
chlD
Cobaltochelatase subunit; Function of strongly homologous gene; transporter.
 
  
 0.652
CCH88913.1
Lycopene cyclase domain protein; Function of strongly homologous gene; enzyme.
 
     0.648
mreB
Cell wall actin-like component MreB, Rod shaping protein; Function of strongly homologous gene; cell process.
      
 0.625
phr
Deoxyribodipyrimidine photo-lyase; Function of strongly homologous gene; enzyme; Belongs to the DNA photolyase family.
 
  
 0.611
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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