Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH88915.1Transcriptional regulator; Function of strongly homologous gene; regulator. (107 aa)    
Predicted Functional Partners:
CCH88913.1
Lycopene cyclase domain protein; Function of strongly homologous gene; enzyme.
       0.832
crtY
Lycopene cyclase domain; Function of strongly homologous gene; enzyme.
       0.832
CCH90898.1
Conserved protein of unknown function, putative Ca2+-binding domain; Homologs of previously reported genes of unknown function.
  
    0.761
CCH89312.1
Homologs of previously reported genes of unknown function.
  
     0.582
CCH88793.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.574
Hao
Hydroxyacid oxidase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.569
CCH89770.1
Putative Zn-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.555
CCH86023.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
   
    0.542
spk
Two-component serine/threonine-protein kinase PK-1; Function of strongly homologous gene; enzyme.
     
 0.541
CCH90126.1
Homologs of previously reported genes of unknown function.
  
     0.537
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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