STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HaoHydroxyacid oxidase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (385 aa)    
Predicted Functional Partners:
lutP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.678
CCH88915.1
Transcriptional regulator; Function of strongly homologous gene; regulator.
       0.569
CCH88913.1
Lycopene cyclase domain protein; Function of strongly homologous gene; enzyme.
       0.565
crtY
Lycopene cyclase domain; Function of strongly homologous gene; enzyme.
       0.565
CCH90767.1
Homologs of previously reported genes of unknown function.
  
  
 0.502
CCH90543.1
Serine-glyoxylate aminotransferase; Function of strongly homologous gene; enzyme.
  
 0.495
CCH87716.1
FAD/FMN-dependent dehydrogenase; Function of strongly homologous gene; enzyme.
  
 0.489
CCH90542.1
D-lactate dehydrogenase (cytochrome); Function of strongly homologous gene; enzyme.
  
 0.489
spk
Two-component serine/threonine-protein kinase PK-1; Function of strongly homologous gene; enzyme.
       0.454
nfo
Endonuclease IV with intrinsic 3'-5' exonuclease activity; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.446
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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