STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88933.1Glycosyltransferase; Function of strongly homologous gene; enzyme. (373 aa)    
Predicted Functional Partners:
CCH88934.1
Zn-dependent protease with chaperone function; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.773
CCH90053.1
Homologs of previously reported genes of unknown function.
  
     0.692
CCH88778.1
Bacterial lipid A biosynthesis acyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.685
CCH88776.1
Homologs of previously reported genes of unknown function.
 
    0.652
CCH88598.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
  
     0.576
CCH88935.1
Putative Cell wall-associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.553
CCH86063.1
Putative hydrolase or acyltransferase of alpha/beta superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.540
treZ
Malto-oligosyltrehalose trehalohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.515
glgP
Glycogen phosphorylase; Function of strongly homologous gene; enzyme.
  
 0.513
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.512
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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